I just downloaded it and things are working perfectly. Are you patching a 1.0 unheadered rom? I should've mentioned that. 
I forgot to paste this with my zip! 

This for anybody who wants them. This folder has 4 files. Dixie Kong Country is a standalone version. Dixie Kong Country - no asm is meant to be used with the other programs. The entrance rando has no limits (at least as far as I can see). The Enemy Rando is older and a bit more buggy. With Dixie Kong Country - no asm, always choose static. However, on vanilla, always choose ultimate.
EDIT
In my defence, I've been hacking dkc so long and the fact that this is the atlas, that I figured 1.0/unheadered was assumed for this site.